TEXMST Gene Info

Gene Name : BRCA1 DNA repair associated

GTEx V9

NCBI GeneID : 672	NCBI : NM_007294.4	NCBI : NP_009225.1
Chromosome : 17	Strand : -
MANE Select : ENST00000357654	MANE Plus Clinical :

	Gene Symbol	Ensembl Gene ID	Start	End
MANE	BRCA1	ENSG00000012048	43044295	43125364
GTEx V8	BRCA1	ENSG00000012048	43044294	43170245
Gencode v40	BRCA1	ENSG00000012048	43044294	43170245

Gencode v26 (GTEx V8)											Gencode v40
V8 TRP-Tx	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
☉	ENST00000352993	22	3668	6	2166	7	41.53	1			ENST00000352993	22	3668	6	2166	7
	ENST00000357654	23	7094	1	5592	2	21.07	2	☀	P:2	ENST00000357654	23	7088	2	5592	2	☀	P:2
	ENST00000461574	4	726	24	726	19	14.43	3			ENST00000461574	4	726	27	726	21
	ENST00000618469	2	718	25	71	28	3.61	4			ENST00000618469	2	718	28	71	32
	ENST00000472490	2	561	28	0	29	2.55	5			ENST00000472490	2	561	31	0	33
	ENST00000473961	4	958	19	958	17	1.84	6			ENST00000473961	4	958	22	958	19
	ENST00000487825	7	800	20	800	18	1.64	7			ENST00000487825	7	800	23	800	20
	ENST00000621897	3	375	30	0	29	1.49	8			ENST00000621897	3	375	34	0	33
	ENST00000468300	22	3273	7	2100	8	1.31	9			ENST00000468300	22	3273	7	2100	8
	ENST00000461798	7	582	26	192	25	0.93	10			ENST00000461798	7	582	29	192	29
	ENST00000586385	8	781	21	522	22	0.91	11			ENST00000586385	8	781	24	522	24
	ENST00000471181	24	5936	2	5655	1	0.84	12		A:2	ENST00000471181	24	7270	1	5655	1		A:2
	ENST00000478531	18	1972	12	1870	10	0.80	13			ENST00000478531	18	1972	14	1870	11
	ENST00000591849	5	563	27	291	24	0.78	14			ENST00000591849	5	563	30	291	26
	ENST00000591534	11	1282	18	1065	16	0.71	15			ENST00000591534	11	1282	20	1065	18
	ENST00000497488	2	779	22	531	21	0.71	16			ENST00000497488	2	779	25	531	23
	ENST00000354071	10	4497	5	4200	4	0.71	17			ENST00000354071	10	4497	5	4200	4
	ENST00000461221	23	5693	4	192	25	0.68	18			ENST00000461221	23	5693	4	192	29
	ENST00000476777	9	769	23	667	20	0.59	19			ENST00000476777	9	769	26	667	22
	ENST00000412061	2	1312	17	1312	15	0.59	20			ENST00000412061	2	1312	19	1312	17
	ENST00000491747	23	2379	9	2280	6	0.48	21			ENST00000491747	23	2379	10	2280	6
	ENST00000484087	12	1495	16	1495	13	0.38	22			ENST00000484087	12	1495	18	1495	15
	ENST00000489037	5	455	29	296	23	0.32	23			ENST00000489037	5	455	33	296	25
	ENST00000634433	8	2534	8	2395	5	0.31	24			ENST00000634433	8	2534	9	2395	5
	ENST00000493795	22	5732	3	5451	3	0.22	25			ENST00000493795	22	5732	3	5451	3
	ENST00000492859	11	1584	15	180	27	0.22	26			ENST00000492859	11	1584	17	180	31
	ENST00000494123	10	1612	14	1419	14	0.15	27			ENST00000494123	10	1612	16	1419	16
	ENST00000477152	9	1980	11	1867	11	0.08	28			ENST00000477152	9	1980	13	1867	12
	ENST00000493919	17	1948	13	1716	12	0.08	29			ENST00000493919	17	1948	15	1716	14
	ENST00000470026	10	2108	10	1947	9	0.03	30			ENST00000470026	10	2108	12	1947	10

Gencode v26 (GTEx V8)											Gencode v40
V8 TRP-Tx	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
	ENST00000000000										ENST00000642945	11	1255	21	246	27
	ENST00000000000										ENST00000644379	15	2571	8	1979	9
	ENST00000000000										ENST00000644555	7	558	32	197	28
	ENST00000000000										ENST00000652672	11	2291	11	1805	13

ENSG00000012048 BRCA1

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