TEXMST Gene Info

COL9A1

GTEx V9

Gene Name : collagen type IX alpha 1 chain

GTEx V8

NCBI GeneID : 1297	NCBI : NM_001851.6	NCBI : NP_001842.3
Chromosome : 6	Strand : -
MANE Select : ENST00000357250	MANE Plus Clinical :

	Gene Symbol	Ensembl Gene ID	Start	End
MANE	COL9A1	ENSG00000112280	70216126	70303084
GTEx V9	COL9A1	ENSG00000112280	70215060	70303083
Gencode v40	COL9A1	ENSG00000112280	70216039	70303084

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
☉	ENST00000320755	32	3059	2	2037	2	88.45	1			ENST00000320755	32	3051	4	2037	3
	ENST00000493682	15	1117	4	0	4	1.60	3			ENST00000493682	19	3513	3	0	8
	ENST00000370496	11	1372	3	987	3	0.75	4			ENST00000370496	11	1372	13	987	5
	ENST00000357250	38	4761	1	2766	1	9.20	2	☀	P:1	ENST00000357250	38	3697	2	2766	1	☀	P:1

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
	ENST00000000000										ENST00000360859	19	2193	10	0	8
	ENST00000000000										ENST00000447041	13	690	14	157	7
	ENST00000000000										ENST00000470652	2	531	15	0	8
	ENST00000000000										ENST00000486080	10	1844	12	0	8
	ENST00000000000										ENST00000489611	27	1940	11	0	8
	ENST00000000000										ENST00000489861	4	243	16	0	8
	ENST00000000000										ENST00000644493	33	2548	8	339	6
	ENST00000000000										ENST00000682313	5	2545	9	0	8
	ENST00000000000										ENST00000683602	26	4339	1	0	8
	ENST00000000000										ENST00000683758	31	2812	7	1899	4
	ENST00000000000										ENST00000683980	33	2957	5	2067	2
	ENST00000000000										ENST00000684176	32	2849	6	0	8

ENSG00000112280 COL9A1

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