TEXMST Gene Info

Gene Name : CLN3 lysosomal/endosomal transmembrane protein, battenin

GTEx V8

NCBI GeneID : 1201	NCBI : NM_001042432.2	NCBI : NP_001035897.1
Chromosome : 16	Strand : -
MANE Select : ENST00000636147	MANE Plus Clinical :

	Gene Symbol	Ensembl Gene ID	Start	End
MANE	CLN3	ENSG00000188603	28477279	28492074
GTEx V9	CLN3	ENSG00000188603	28474110	28495575
Gencode v40	CLN3	ENSG00000188603	28474110	28495575

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
☉	ENST00000359984	15	1876	10	1317	1	29.41	1		P:1	ENST00000359984	15	1876	9	1317	1		P:1
	ENST00000568076	13	1968	7	0	23	4.52	8			ENST00000568076	13	1968	6	0	37
	ENST00000564091	9	790	29	657	14	0.72	18			ENST00000564091	9	790	45	657	18
	ENST00000357857	14	1720	14	1155	7	6.55	6			ENST00000357857	14	1720	13	1155	8
	ENST00000637184	17	1753	13	1092	9	6.10	7			ENST00000637184	17	1753	12	1092	11
	ENST00000636907	7	1679	16	0	23	2.57	11			ENST00000636907	7	1679	16	0	37
	ENST00000360019	15	1840	11	1245	5	0.49	20			ENST00000360019	15	1841	10	1245	5
	ENST00000561689	14	1957	8	0	23	8.09	3			ENST00000561689	14	1957	7	0	37
	ENST00000569430	17	3867	1	1317	1	2.57	10		P:1	ENST00000569430	17	5765	1	1317	1		P:1
	ENST00000636839	15	2018	6	0	23	3.02	9			ENST00000636839	15	2018	5	0	37
	ENST00000635958	15	1837	12	0	23	0.98	15			ENST00000635958	15	1837	11	0	37
	ENST00000568443	6	969	28	686	13	0.05	28			ENST00000568443	6	969	42	686	17
	ENST00000333496	14	1608	17	1245	5	0.04	30			ENST00000333496	14	1608	18	1245	5
	ENST00000636977	12	2969	4	0	23	6.80	5			ENST00000636977	12	2969	3	0	37
	ENST00000565316	14	1318	24	1266	4	0.02	33			ENST00000565316	14	1318	28	1266	4
	ENST00000357806	12	1469	20	1020	11	0.93	17			ENST00000357806	12	1469	22	1020	12
	ENST00000636147	16	3832	2	1317	1	7.63	4	☀	P:1	ENST00000636147	16	1685	14	1317	1	☀	P:1
	ENST00000637107	14	1946	9	549	15	1.01	14			ENST00000637107	14	1946	8	549	19
	ENST00000637050	4	1684	15	0	23	1.61	12			ENST00000637050	4	1684	15	0	37
	ENST00000636853	15	2289	5	0	23	0.97	16			ENST00000636853	15	2289	4	0	37
	ENST00000565688	7	650	32	530	17	0.04	31			ENST00000565688	7	650	51	530	23
	ENST00000563874	15	3081	3	0	23	13.21	2			ENST00000563874	15	3081	2	0	37
	ENST00000566083	10	1409	22	0	23	0.08	26			ENST00000566083	10	1409	25	0	37
	ENST00000567495	9	769	30	468	18	0.08	27			ENST00000567495	9	769	46	468	26
	ENST00000628023	10	1183	27	249	20	0.03	32			ENST00000628023	10	1183	34	249	30
	ENST00000637985	9	764	31	159	22	0.68	19			ENST00000637985	9	764	47	159	35
	ENST00000565140	14	1225	26	546	16	0.16	21			ENST00000565140	14	1225	32	546	20
	ENST00000637100	14	1284	25	1113	8	0.13	22			ENST00000637100	14	1284	30	1113	10
	ENST00000395653	11	1430	21	858	12	1.09	13			ENST00000395653	11	1430	24	858	14
	ENST00000635861	13	1404	23	234	21	0.05	29			ENST00000635861	13	1404	26	234	31
	ENST00000565236	4	582	33	0	23	0.13	24			ENST00000565236	4	582	54	0	37
	ENST00000636172	14	1536	19	396	19	0.11	25			ENST00000636172	14	1536	21	396	27

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
	ENST00000631023	12	1586	18	1026	10	0.13	23			ENST00000000000
	ENST00000000000										ENST00000355477	14	1173	35	1173	7
	ENST00000000000										ENST00000561505	5	495	61	162	34
	ENST00000000000										ENST00000564574	12	1159	37	0	37
	ENST00000000000										ENST00000565047	6	461	62	0	37
	ENST00000000000										ENST00000565354	6	759	48	0	37
	ENST00000000000										ENST00000565778	7	688	50	501	25
	ENST00000000000										ENST00000566040	3	544	59	0	37
	ENST00000000000										ENST00000566057	11	931	43	318	29
	ENST00000000000										ENST00000566472	2	551	58	0	37
	ENST00000000000										ENST00000566816	2	570	55	0	37
	ENST00000000000										ENST00000566824	14	1326	27	0	37
	ENST00000000000										ENST00000567160	3	616	53	0	37
	ENST00000000000										ENST00000567804	5	557	57	222	33
	ENST00000000000										ENST00000567963	15	1452	23	1155	8
	ENST00000000000										ENST00000568422	13	1168	36	546	20
	ENST00000000000										ENST00000568452	15	1616	17	0	37
	ENST00000000000										ENST00000568472	6	1011	40	0	37
	ENST00000000000										ENST00000568497	7	758	49	86	36
	ENST00000000000										ENST00000568558	8	634	52	530	23
	ENST00000000000										ENST00000569030	13	1109	38	762	16
	ENST00000000000										ENST00000635973	10	1084	39	807	15
	ENST00000000000										ENST00000636228	13	1224	33	1011	13
	ENST00000000000										ENST00000636351	11	1292	29	0	37
	ENST00000000000										ENST00000636355	4	975	41	0	37
	ENST00000000000										ENST00000636685	4	801	44	0	37
	ENST00000000000										ENST00000637110	4	565	56	0	37
	ENST00000000000										ENST00000637578	13	1577	20	234	31
	ENST00000000000										ENST00000637686	3	533	60	0	37
	ENST00000000000										ENST00000637699	12	1228	31	546	20
	ENST00000000000										ENST00000637871	13	1606	19	396	27

ENSG00000188603 CLN3

TPM Log2 Log10