TEXMST Gene Info

SCN2A

GTEx V9

Gene Name : sodium voltage-gated channel alpha subunit 2

GTEx V8

NCBI GeneID : 6326	NCBI : NM_001371246.1	NCBI : NP_001358175.1
Chromosome : 2	Strand : +
MANE Select : ENST00000375437	MANE Plus Clinical : ENST00000631182

	Gene Symbol	Ensembl Gene ID	Start	End
MANE	SCN2A	ENSG00000136531	165239414	165392304
GTEx V9	SCN2A	ENSG00000136531	165194992	165392310
Gencode v40	SCN2A	ENSG00000136531	165194992	165392310

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
	ENST00000640791	3	8169	12	0	13	56.44	1			ENST00000640791	3	8169	12	0	17
	ENST00000637367	14	4408	13	279	11	14.86	2			ENST00000637367	14	4408	13	279	15
	ENST00000635945	15	3119	14	0	13	9.57	3			ENST00000635945	15	3119	14	0	17
	ENST00000636662	27	9456	2	279	11	8.35	4			ENST00000636662	27	9456	2	279	15
	ENST00000480032	25	11676	1	0	13	5.69	5			ENST00000480032	25	11676	1	0	17
☉	ENST00000636071	28	8881	4	6018	1	1.23	6			ENST00000636071	28	8881	4	6018	1
	ENST00000631182	27	8430	11	6018	1	1.06	7			ENST00000631182	27	8776	6	6018	1
	ENST00000375437	27	8792	6	6018	1	0.73	8	☀	P:1	ENST00000375437	27	8776	6	6018	1	☀	P:1
	ENST00000636384	29	9007	3	2196	7	0.59	9			ENST00000636384	29	9007	3	2196	7
	ENST00000283256	27	8660	7	6018	1	0.48	10		P:1	ENST00000283256	27	8660	8	6018	1		P:1
	ENST00000637266	27	8610	8	6018	1	0.46	11		P:1	ENST00000637266	27	8610	9	6018	1		P:1
	ENST00000636135	28	8519	10	1677	9	0.24	12			ENST00000636135	28	8519	11	1677	9
	ENST00000636985	27	8856	5	5622	6	0.10	13			ENST00000636985	27	8856	5	5622	6
	ENST00000486878	4	661	16	537	10	0.09	14			ENST00000486878	4	661	20	537	12
	ENST00000636769	28	8573	9	2193	8	0.06	15			ENST00000636769	28	8573	10	2193	8
	ENST00000638151	14	2832	15	0	13	0.06	16			ENST00000638151	14	2832	15	0	17

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
	ENST00000000000										ENST00000424833	11	1807	16	1517	10
	ENST00000000000										ENST00000673831	3	1145	18	393	14
	ENST00000000000										ENST00000673883	3	964	19	423	13
	ENST00000000000										ENST00000674133	6	1455	17	1256	11

ENSG00000136531 SCN2A

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