GTEx V9
Gene Name : collagen type II alpha 1 chain
NCBI GeneID : 1280 NCBI : NM_001844.5 NCBI : NP_001835.3
Chromosome : 12 Strand : -
MANE Select : ENST00000380518 MANE Plus Clinical :
  Gene Symbol Ensembl Gene ID Start End
MANE COL2A1 ENSG00000139219 47972967 48004476
GTEx V9 COL2A1 ENSG00000139219 47972964 48004486
Gencode v40 COL2A1 ENSG00000139219 47972966 48004554

Gencode v26 (GTEx V9) Gencode v40
V9
TRP-Tx
Transcript ID Exon
Count
Transcript
Length
Tx Length
Rank
CDS
Length
CDS
Rank
Exp
Tx%
Exp
Rank
MANE
Match
APPRIS Transcript ID Exon
Count
Transcript
Length
Tx Length
Rank
CDS
Length
CDS
Rank
MANE
Match
APPRIS
ENST00000380518 54 5071 1 4464 1 96.82 1 P:1 ENST00000380518 54 5059 1 4464 1 P:1
ENST00000490609 2 679 2 0 2 3.18 2 ENST00000490609 2 747 5 0 3
Gencode v26 (GTEx V9) Gencode v40
V9
TRP-Tx
No Match
Transcript ID
Exon
Count
Transcript
Length
Tx Length
Rank
CDS
Length
CDS
Rank
Exp
Tx%
Exp
Rank
MANE
Match
APPRIS No Match
Transcript ID
Exon
Count
Transcript
Length
Tx Length
Rank
CDS
Length
CDS
Rank
MANE
Match
APPRIS
ENST00000000000 ENST00000337299 53 4442 2 4257 2
ENST00000000000 ENST00000465743 2 546 8 0 3
ENST00000000000 ENST00000466884 2 478 9 0 3
ENST00000000000 ENST00000474996 8 760 4 0 3
ENST00000000000 ENST00000483376 8 641 7 0 3
ENST00000000000 ENST00000493991 37 3756 3 0 3
ENST00000000000 ENST00000546974 6 703 6 0 3

ENSG00000139219 COL2A1

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