TEXMST Gene Info

SCN9A

GTEx V9

Gene Name : sodium voltage-gated channel alpha subunit 9

GTEx V8

NCBI GeneID : 6335	NCBI : NM_001365536.1	NCBI : NP_001352465.1
Chromosome : 2	Strand : -
MANE Select : ENST00000642356	MANE Plus Clinical :

	Gene Symbol	Ensembl Gene ID	Start	End
MANE	SCN9A	ENSG00000169432	166195185	166375944
GTEx V9	SCN9A	ENSG00000169432	166195184	166375993
Gencode v40	SCN9A	ENSG00000169432	166195184	166376001

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
☉	ENST00000409672	27	9768	2	5934	2	92.97	1			ENST00000409672	27	9768	1	5934	3
	ENST00000472119	3	905	3	0	3	6.92	2			ENST00000472119	7	2283	7	0	11
	ENST00000303354	27	9786	1	5967	1	0.11	3		P:1	ENST00000303354	27	9698	3	5967	1		P:1

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
	ENST00000000000										ENST00000452182	11	1473	10	1136	7
	ENST00000000000										ENST00000454569	15	3231	5	2499	5
	ENST00000000000										ENST00000642356	27	9752	2	5967	1	☀	P:1
	ENST00000000000										ENST00000643319	4	587	12	357	9
	ENST00000000000										ENST00000645283	2	1097	11	585	8
	ENST00000000000										ENST00000645815	2	2188	9	0	11
	ENST00000000000										ENST00000645907	27	7392	4	5934	3
	ENST00000000000										ENST00000646694	3	2717	6	0	11
	ENST00000000000										ENST00000667201	13	2255	8	1936	6
	ENST00000000000										ENST00000667991	3	527	13	267	10

ENSG00000169432 SCN9A

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