TEXMST Gene Info

COL25A1

GTEx V9

Gene Name : collagen type XXV alpha 1 chain

GTEx V8

NCBI GeneID : 84570	NCBI : NM_198721.4	NCBI : NP_942014.1
Chromosome : 4	Strand : -
MANE Select : ENST00000399132	MANE Plus Clinical :

	Gene Symbol	Ensembl Gene ID	Start	End
MANE	COL25A1	ENSG00000188517	108808725	109302658
GTEx V9	COL25A1	ENSG00000188517	108810720	109302657
Gencode v40	COL25A1	ENSG00000188517	108808724	109302752

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
☉	ENST00000399126	35	2674	3	1929	2	35.50	1			ENST00000399126	35	2674	4	1929	4
	ENST00000399127	33	2500	4	1938	1	23.62	2			ENST00000399127	33	2500	5	1938	3
	ENST00000505591	2	428	6	211	5	16.53	3			ENST00000505591	2	428	7	211	6
	ENST00000505377	4	448	5	0	6	13.03	4			ENST00000505377	4	448	6	0	8
	ENST00000494183	37	4630	2	1491	3	6.67	5			ENST00000494183	37	4630	3	1491	5

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
	ENST00000622134	36	4819	1	1485	4	4.65	6			ENST00000000000
	ENST00000000000										ENST00000399132	38	7713	2	1965	2	☀
	ENST00000000000										ENST00000512961	3	316	8	88	7
	ENST00000000000										ENST00000642955	39	8026	1	2091	1		P:1

ENSG00000188517 COL25A1

TPM Log2 Log10

Copyright © 2022 TDL Lab. All Rights Reserved.