TEXMST Gene Info

PRPF40A

GTEx V9

Gene Name : pre-mRNA processing factor 40 homolog A

GTEx V8

NCBI GeneID : 55660	NCBI : NM_001365597.4	NCBI : NP_001352526.1
Chromosome : 2	Strand : -
MANE Select : ENST00000545856	MANE Plus Clinical :

	Gene Symbol	Ensembl Gene ID	Start	End
MANE	PRPF40A	ENSG00000196504	152651732	152717461
GTEx V9	PRPF40A	ENSG00000196504	152651592	152717997
Gencode v40	PRPF40A	ENSG00000196504	152651592	152718012

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
☉	ENST00000410080	26	8048	1	2793	1	87.67	1		P:3	ENST00000410080	26	8048	1	2985	1		P:3
	ENST00000545856	13	1358	3	1345	2	6.62	2	☀	A:1	ENST00000545856	26	7515	2	2919	2	☀	A:1
	ENST00000450303	4	496	7	0	6	2.03	3			ENST00000450303	4	496	10	0	8
	ENST00000489741	3	776	5	0	6	1.97	4			ENST00000489741	3	776	7	0	8
	ENST00000493468	9	1043	4	1041	3	0.82	5			ENST00000493468	9	1121	6	1103	5
	ENST00000354363	14	1622	2	328	5	0.65	6			ENST00000354363	14	1622	5	306	7
	ENST00000486100	3	569	6	0	6	0.16	7			ENST00000486100	3	569	8	0	8
	ENST00000471167	4	333	9	0	6	0.05	8			ENST00000471167	4	333	12	0	8
	ENST00000471701	2	293	10	0	6	0.00	9			ENST00000471701	2	293	13	0	8
	ENST00000448428	5	490	8	490	4	0.00	10			ENST00000448428	5	490	11	472	6
	ENST00000472760	2	243	11	0	6	0.00	11			ENST00000472760	2	243	14	0	8

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
	ENST00000000000										ENST00000467114	4	546	9	0	8
	ENST00000000000										ENST00000696381	26	2915	3	2874	3		A:2
	ENST00000000000										ENST00000696382	27	2805	4	2748	4

ENSG00000196504 PRPF40A

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