GTEx V9
Gene Name : collagen type XIII alpha 1 chain
NCBI GeneID : 1305 NCBI : NM_001368882.1 NCBI : NP_001355811.1
Chromosome : 10 Strand : +
MANE Select : ENST00000645393 MANE Plus Clinical :
  Gene Symbol Ensembl Gene ID Start End
MANE COL13A1 ENSG00000197467 69801906 69959144
GTEx V9 COL13A1 ENSG00000197467 69801930 69964275
Gencode v40 COL13A1 ENSG00000197467 69801879 69964275

Gencode v26 (GTEx V9) Gencode v40
V9
TRP-Tx
Transcript ID Exon
Count
Transcript
Length
Tx Length
Rank
CDS
Length
CDS
Rank
Exp
Tx%
Exp
Rank
MANE
Match
APPRIS Transcript ID Exon
Count
Transcript
Length
Tx Length
Rank
CDS
Length
CDS
Rank
MANE
Match
APPRIS
ENST00000357811 38 2991 3 2052 4 44.20 1 ENST00000357811 38 2999 5 2055 5
ENST00000478219 2 2586 5 0 11 27.18 2 ENST00000478219 2 3396 1 0 27
ENST00000518052 6 290 13 0 11 0.55 11 ENST00000518052 6 290 51 0 27
ENST00000398975 14 1057 10 743 9 6.88 3 ENST00000398975 14 1057 38 743 18
ENST00000520133 34 1833 9 1833 7 0.86 9 ENST00000520133 34 1833 28 1833 12
ENST00000520267 35 2276 6 1938 6 3.03 7 ENST00000520267 35 2276 17 1938 10
ENST00000456019 10 749 11 523 10 1.68 8 ENST00000456019 10 749 45 523 24
ENST00000522165 38 2061 7 2061 3 5.22 5 ENST00000522165 38 2061 21 2061 4
ENST00000479733 41 2934 4 1749 8 3.88 6 ENST00000479733 41 2934 6 1749 13
ENST00000517713 37 2007 8 2007 5 0.37 12 ENST00000517713 37 2007 22 2007 6
ENST00000398978 40 3093 1 2154 1 5.48 4 ENST00000398978 40 3115 3 2154 2
ENST00000484990 3 360 12 0 11 0.12 13 ENST00000484990 3 360 48 0 27
ENST00000354547 39 3027 2 2088 2 0.57 10 ENST00000354547 39 3027 4 2088 3
Gencode v26 (GTEx V9) Gencode v40
V9
TRP-Tx
No Match
Transcript ID
Exon
Count
Transcript
Length
Tx Length
Rank
CDS
Length
CDS
Rank
Exp
Tx%
Exp
Rank
MANE
Match
APPRIS No Match
Transcript ID
Exon
Count
Transcript
Length
Tx Length
Rank
CDS
Length
CDS
Rank
MANE
Match
APPRIS
ENST00000000000 ENST00000398969 37 2462 12 699 19
ENST00000000000 ENST00000645393 41 3148 2 2187 1 P:1
ENST00000000000 ENST00000673628 36 2372 15 1956 9
ENST00000000000 ENST00000673641 37 2391 13 1992 7
ENST00000000000 ENST00000673681 11 1176 35 0 27
ENST00000000000 ENST00000673736 10 2616 7 0 27
ENST00000000000 ENST00000673755 5 299 50 0 27
ENST00000000000 ENST00000673768 11 937 42 537 23
ENST00000000000 ENST00000673802 25 1351 34 1351 14
ENST00000000000 ENST00000673830 4 2265 18 0 27
ENST00000000000 ENST00000673842 36 2519 9 1977 8
ENST00000000000 ENST00000673850 17 1136 36 0 27
ENST00000000000 ENST00000673914 35 2179 19 927 17
ENST00000000000 ENST00000673927 2 346 49 0 27
ENST00000000000 ENST00000673931 19 1050 39 1019 16
ENST00000000000 ENST00000673957 38 2482 10 1032 15
ENST00000000000 ENST00000673977 7 726 46 344 25
ENST00000000000 ENST00000674008 39 2343 16 663 21
ENST00000000000 ENST00000674040 37 2480 11 663 21
ENST00000000000 ENST00000674050 28 1876 27 0 27
ENST00000000000 ENST00000674121 34 2386 14 1887 11
ENST00000000000 ENST00000674124 33 2131 20 264 26
ENST00000000000 ENST00000682048 23 1677 29 0 27
ENST00000000000 ENST00000682251 11 1001 41 0 27
ENST00000000000 ENST00000682511 17 1355 33 0 27
ENST00000000000 ENST00000682574 4 900 43 0 27
ENST00000000000 ENST00000682679 39 2594 8 699 19
ENST00000000000 ENST00000682702 8 847 44 0 27
ENST00000000000 ENST00000682817 12 1009 40 0 27
ENST00000000000 ENST00000683194 31 1879 26 0 27
ENST00000000000 ENST00000683633 30 1979 24 0 27
ENST00000000000 ENST00000683667 31 1928 25 0 27
ENST00000000000 ENST00000683952 13 1120 37 0 27
ENST00000000000 ENST00000683993 23 1610 30 0 27
ENST00000000000 ENST00000684309 33 1993 23 0 27
ENST00000000000 ENST00000684323 9 595 47 0 27
ENST00000000000 ENST00000684376 18 1389 32 0 27
ENST00000000000 ENST00000684387 26 1403 31 0 27

ENSG00000197467 COL13A1

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