TEXMST Gene Info

Gene Name : collagen type XIII alpha 1 chain

GTEx V8

NCBI GeneID : 1305	NCBI : NM_001368882.1	NCBI : NP_001355811.1
Chromosome : 10	Strand : +
MANE Select : ENST00000645393	MANE Plus Clinical :

	Gene Symbol	Ensembl Gene ID	Start	End
MANE	COL13A1	ENSG00000197467	69801906	69959144
GTEx V9	COL13A1	ENSG00000197467	69801930	69964275
Gencode v40	COL13A1	ENSG00000197467	69801879	69964275

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
☉	ENST00000357811	38	2991	3	2052	4	44.20	1			ENST00000357811	38	2999	5	2055	5
	ENST00000478219	2	2586	5	0	11	27.18	2			ENST00000478219	2	3396	1	0	27
	ENST00000398975	14	1057	10	743	9	6.88	3			ENST00000398975	14	1057	38	743	18
	ENST00000398978	40	3093	1	2154	1	5.48	4			ENST00000398978	40	3115	3	2154	2
	ENST00000522165	38	2061	7	2061	3	5.22	5			ENST00000522165	38	2061	21	2061	4
	ENST00000479733	41	2934	4	1749	8	3.88	6			ENST00000479733	41	2934	6	1749	13
	ENST00000520267	35	2276	6	1938	6	3.03	7			ENST00000520267	35	2276	17	1938	10
	ENST00000456019	10	749	11	523	10	1.68	8			ENST00000456019	10	749	45	523	24
	ENST00000520133	34	1833	9	1833	7	0.86	9			ENST00000520133	34	1833	28	1833	12
	ENST00000354547	39	3027	2	2088	2	0.57	10			ENST00000354547	39	3027	4	2088	3
	ENST00000518052	6	290	13	0	11	0.55	11			ENST00000518052	6	290	51	0	27
	ENST00000517713	37	2007	8	2007	5	0.37	12			ENST00000517713	37	2007	22	2007	6
	ENST00000484990	3	360	12	0	11	0.12	13			ENST00000484990	3	360	48	0	27

Gencode v26 (GTEx V9)											Gencode v40
V9 TRP-Tx	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	Exp Tx%	Exp Rank	MANE Match	APPRIS	No Match Transcript ID	Exon Count	Transcript Length	Tx Length Rank	CDS Length	CDS Rank	MANE Match	APPRIS
	ENST00000000000										ENST00000398969	37	2462	12	699	19
	ENST00000000000										ENST00000645393	41	3148	2	2187	1	☀	P:1
	ENST00000000000										ENST00000673628	36	2372	15	1956	9
	ENST00000000000										ENST00000673641	37	2391	13	1992	7
	ENST00000000000										ENST00000673681	11	1176	35	0	27
	ENST00000000000										ENST00000673736	10	2616	7	0	27
	ENST00000000000										ENST00000673755	5	299	50	0	27
	ENST00000000000										ENST00000673768	11	937	42	537	23
	ENST00000000000										ENST00000673802	25	1351	34	1351	14
	ENST00000000000										ENST00000673830	4	2265	18	0	27
	ENST00000000000										ENST00000673842	36	2519	9	1977	8
	ENST00000000000										ENST00000673850	17	1136	36	0	27
	ENST00000000000										ENST00000673914	35	2179	19	927	17
	ENST00000000000										ENST00000673927	2	346	49	0	27
	ENST00000000000										ENST00000673931	19	1050	39	1019	16
	ENST00000000000										ENST00000673957	38	2482	10	1032	15
	ENST00000000000										ENST00000673977	7	726	46	344	25
	ENST00000000000										ENST00000674008	39	2343	16	663	21
	ENST00000000000										ENST00000674040	37	2480	11	663	21
	ENST00000000000										ENST00000674050	28	1876	27	0	27
	ENST00000000000										ENST00000674121	34	2386	14	1887	11
	ENST00000000000										ENST00000674124	33	2131	20	264	26
	ENST00000000000										ENST00000682048	23	1677	29	0	27
	ENST00000000000										ENST00000682251	11	1001	41	0	27
	ENST00000000000										ENST00000682511	17	1355	33	0	27
	ENST00000000000										ENST00000682574	4	900	43	0	27
	ENST00000000000										ENST00000682679	39	2594	8	699	19
	ENST00000000000										ENST00000682702	8	847	44	0	27
	ENST00000000000										ENST00000682817	12	1009	40	0	27
	ENST00000000000										ENST00000683194	31	1879	26	0	27
	ENST00000000000										ENST00000683633	30	1979	24	0	27
	ENST00000000000										ENST00000683667	31	1928	25	0	27
	ENST00000000000										ENST00000683952	13	1120	37	0	27
	ENST00000000000										ENST00000683993	23	1610	30	0	27
	ENST00000000000										ENST00000684309	33	1993	23	0	27
	ENST00000000000										ENST00000684323	9	595	47	0	27
	ENST00000000000										ENST00000684376	18	1389	32	0	27
	ENST00000000000										ENST00000684387	26	1403	31	0	27

ENSG00000197467 COL13A1

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